WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 1734509 total bases: 249769296 Q20 bases: 235886405(94.4417%) Q30 bases: 215319100(86.2072%) Read1 after filtering: total reads: 1733713 total bases: 248972130 Q20 bases: 235698833(94.6688%) Q30 bases: 215281437(86.4681%) Filtering result: reads passed filter: 1733713 reads failed due to low quality: 594 reads failed due to too many N: 202 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 59.1826% JSON report: DabobBayWA_Q362.json HTML report: DabobBayWA_Q362.html fastp -i DabobBayWA_Q362.F.fq.gz -o DabobBayWA_Q362.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_Q362.json -h DabobBayWA_Q362.html fastp v0.20.0, time used: 28 seconds