WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 1847185 total bases: 265994640 Q20 bases: 251435179(94.5264%) Q30 bases: 229680826(86.3479%) Read1 after filtering: total reads: 1846407 total bases: 265423595 Q20 bases: 251290427(94.6752%) Q30 bases: 229641286(86.5188%) Filtering result: reads passed filter: 1846407 reads failed due to low quality: 540 reads failed due to too many N: 238 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 62.1153% JSON report: DabobBayWA_Q361.json HTML report: DabobBayWA_Q361.html fastp -i DabobBayWA_Q361.F.fq.gz -o DabobBayWA_Q361.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_Q361.json -h DabobBayWA_Q361.html fastp v0.20.0, time used: 27 seconds