WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 5798090 total bases: 834924960 Q20 bases: 789437952(94.552%) Q30 bases: 721250435(86.3851%) Read1 after filtering: total reads: 5795550 total bases: 832887398 Q20 bases: 788933054(94.7227%) Q30 bases: 721127669(86.5817%) Filtering result: reads passed filter: 5795550 reads failed due to low quality: 1861 reads failed due to too many N: 679 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 43.5631% JSON report: DabobBayWA_Q360.json HTML report: DabobBayWA_Q360.html fastp -i DabobBayWA_Q360.F.fq.gz -o DabobBayWA_Q360.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_Q360.json -h DabobBayWA_Q360.html fastp v0.20.0, time used: 63 seconds