WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 1667759 total bases: 240157296 Q20 bases: 227127543(94.5745%) Q30 bases: 207781248(86.5188%) Read1 after filtering: total reads: 1667100 total bases: 239248937 Q20 bases: 226921613(94.8475%) Q30 bases: 207747502(86.8332%) Filtering result: reads passed filter: 1667100 reads failed due to low quality: 458 reads failed due to too many N: 201 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 69.0569% JSON report: DabobBayWA_Q240.json HTML report: DabobBayWA_Q240.html fastp -i DabobBayWA_Q240.F.fq.gz -o DabobBayWA_Q240.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_Q240.json -h DabobBayWA_Q240.html fastp v0.20.0, time used: 28 seconds