WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2780874 total bases: 400445856 Q20 bases: 379003627(94.6454%) Q30 bases: 346497852(86.528%) Read1 after filtering: total reads: 2779729 total bases: 399001080 Q20 bases: 378670666(94.9047%) Q30 bases: 346438674(86.8265%) Filtering result: reads passed filter: 2779729 reads failed due to low quality: 769 reads failed due to too many N: 376 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 51.338% JSON report: DabobBayWA_Q237.json HTML report: DabobBayWA_Q237.html fastp -i DabobBayWA_Q237.F.fq.gz -o DabobBayWA_Q237.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_Q237.json -h DabobBayWA_Q237.html fastp v0.20.0, time used: 37 seconds