WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2885367 total bases: 415492848 Q20 bases: 393211149(94.6373%) Q30 bases: 359624634(86.5537%) Read1 after filtering: total reads: 2884113 total bases: 414675383 Q20 bases: 392995492(94.7718%) Q30 bases: 359560527(86.7089%) Filtering result: reads passed filter: 2884113 reads failed due to low quality: 886 reads failed due to too many N: 368 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 55.209% JSON report: DabobBayWA_Q232.json HTML report: DabobBayWA_Q232.html fastp -i DabobBayWA_Q232.F.fq.gz -o DabobBayWA_Q232.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_Q232.json -h DabobBayWA_Q232.html fastp v0.20.0, time used: 37 seconds