WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2508618 total bases: 361240992 Q20 bases: 341739724(94.6016%) Q30 bases: 312503710(86.5084%) Read1 after filtering: total reads: 2507445 total bases: 360126018 Q20 bases: 341472356(94.8202%) Q30 bases: 312446798(86.7604%) Filtering result: reads passed filter: 2507445 reads failed due to low quality: 846 reads failed due to too many N: 327 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 61.9034% JSON report: DabobBayWA_FG230.json HTML report: DabobBayWA_FG230.html fastp -i DabobBayWA_FG230.F.fq.gz -o DabobBayWA_FG230.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_FG230.json -h DabobBayWA_FG230.html fastp v0.20.0, time used: 33 seconds