WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2734471 total bases: 393763824 Q20 bases: 371922296(94.4531%) Q30 bases: 339496207(86.2182%) Read1 after filtering: total reads: 2733341 total bases: 392638182 Q20 bases: 371652784(94.6553%) Q30 bases: 339440998(86.4513%) Filtering result: reads passed filter: 2733341 reads failed due to low quality: 802 reads failed due to too many N: 328 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 56.8945% JSON report: DabobBayWA_FG229.json HTML report: DabobBayWA_FG229.html fastp -i DabobBayWA_FG229.F.fq.gz -o DabobBayWA_FG229.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_FG229.json -h DabobBayWA_FG229.html fastp v0.20.0, time used: 36 seconds