WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 4249774 total bases: 611967456 Q20 bases: 600289402(98.0917%) Q30 bases: 581881275(95.0837%) Read1 after filtering: total reads: 4245542 total bases: 611354605 Q20 bases: 599846900(98.1177%) Q30 bases: 581505861(95.1176%) Filtering result: reads passed filter: 4245542 reads failed due to low quality: 766 reads failed due to too many N: 3466 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 82.6112% JSON report: DabobBayWA_FG211.json HTML report: DabobBayWA_FG211.html fastp -i DabobBayWA_FG211.F.fq.gz -o DabobBayWA_FG211.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_FG211.json -h DabobBayWA_FG211.html fastp v0.20.0, time used: 43 seconds