WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 3547894 total bases: 510896736 Q20 bases: 501096897(98.0818%) Q30 bases: 485590915(95.0468%) Read1 after filtering: total reads: 3544323 total bases: 510379290 Q20 bases: 500723004(98.108%) Q30 bases: 485272869(95.0808%) Filtering result: reads passed filter: 3544323 reads failed due to low quality: 680 reads failed due to too many N: 2891 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 85.8877% JSON report: DabobBayWA_FG202.json HTML report: DabobBayWA_FG202.html fastp -i DabobBayWA_FG202.F.fq.gz -o DabobBayWA_FG202.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_FG202.json -h DabobBayWA_FG202.html fastp v0.20.0, time used: 37 seconds