WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2818455
total bases: 405857520
Q20 bases: 384491960(94.7357%)
Q30 bases: 351967237(86.7219%)

Read1 after filtering:
total reads: 2817410
total bases: 405102429
Q20 bases: 384297534(94.8643%)
Q30 bases: 351911365(86.8697%)

Filtering result:
reads passed filter: 2817410
reads failed due to low quality: 686
reads failed due to too many N: 359
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 59.9132%

JSON report: CypressIslandWA_FG128.json
HTML report: CypressIslandWA_FG128.html

fastp -i CypressIslandWA_FG128.F.fq.gz -o CypressIslandWA_FG128.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG128.json -h CypressIslandWA_FG128.html 
fastp v0.20.0, time used: 36 seconds