WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2768459
total bases: 398658096
Q20 bases: 376678671(94.4866%)
Q30 bases: 343813449(86.2427%)

Read1 after filtering:
total reads: 2767252
total bases: 397897422
Q20 bases: 376475153(94.6161%)
Q30 bases: 343752520(86.3922%)

Filtering result:
reads passed filter: 2767252
reads failed due to low quality: 844
reads failed due to too many N: 363
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 54.4866%

JSON report: CypressIslandWA_FG120.json
HTML report: CypressIslandWA_FG120.html

fastp -i CypressIslandWA_FG120.F.fq.gz -o CypressIslandWA_FG120.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG120.json -h CypressIslandWA_FG120.html 
fastp v0.20.0, time used: 35 seconds