WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2205222
total bases: 317551968
Q20 bases: 300172811(94.5271%)
Q30 bases: 274254146(86.3651%)

Read1 after filtering:
total reads: 2204238
total bases: 316582049
Q20 bases: 299943309(94.7443%)
Q30 bases: 274206751(86.6148%)

Filtering result:
reads passed filter: 2204238
reads failed due to low quality: 744
reads failed due to too many N: 240
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 56.7058%

JSON report: CypressIslandWA_FG119.json
HTML report: CypressIslandWA_FG119.html

fastp -i CypressIslandWA_FG119.F.fq.gz -o CypressIslandWA_FG119.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG119.json -h CypressIslandWA_FG119.html 
fastp v0.20.0, time used: 29 seconds