WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2434424
total bases: 350557056
Q20 bases: 331652319(94.6072%)
Q30 bases: 303263115(86.5089%)

Read1 after filtering:
total reads: 2433293
total bases: 349868928
Q20 bases: 331469955(94.7412%)
Q30 bases: 303208775(86.6635%)

Filtering result:
reads passed filter: 2433293
reads failed due to low quality: 839
reads failed due to too many N: 292
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 54.1087%

JSON report: CypressIslandWA_FG118.json
HTML report: CypressIslandWA_FG118.html

fastp -i CypressIslandWA_FG118.F.fq.gz -o CypressIslandWA_FG118.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG118.json -h CypressIslandWA_FG118.html 
fastp v0.20.0, time used: 33 seconds