WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2370739
total bases: 341386416
Q20 bases: 322760402(94.544%)
Q30 bases: 295141521(86.4538%)

Read1 after filtering:
total reads: 2369630
total bases: 340641306
Q20 bases: 322570513(94.6951%)
Q30 bases: 295088284(86.6273%)

Filtering result:
reads passed filter: 2369630
reads failed due to low quality: 820
reads failed due to too many N: 289
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 55.9532%

JSON report: CypressIslandWA_FG117.json
HTML report: CypressIslandWA_FG117.html

fastp -i CypressIslandWA_FG117.F.fq.gz -o CypressIslandWA_FG117.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG117.json -h CypressIslandWA_FG117.html 
fastp v0.20.0, time used: 38 seconds