WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2570777
total bases: 370191888
Q20 bases: 349744657(94.4766%)
Q30 bases: 319292962(86.2507%)

Read1 after filtering:
total reads: 2569707
total bases: 368830585
Q20 bases: 349432790(94.7407%)
Q30 bases: 319239254(86.5544%)

Filtering result:
reads passed filter: 2569707
reads failed due to low quality: 749
reads failed due to too many N: 321
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 58.0478%

JSON report: CypressIslandWA_FG115.json
HTML report: CypressIslandWA_FG115.html

fastp -i CypressIslandWA_FG115.F.fq.gz -o CypressIslandWA_FG115.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG115.json -h CypressIslandWA_FG115.html 
fastp v0.20.0, time used: 39 seconds