WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2494247
total bases: 359171568
Q20 bases: 339412899(94.4988%)
Q30 bases: 309946526(86.2948%)

Read1 after filtering:
total reads: 2493146
total bases: 357826820
Q20 bases: 339104234(94.7677%)
Q30 bases: 309894178(86.6045%)

Filtering result:
reads passed filter: 2493146
reads failed due to low quality: 811
reads failed due to too many N: 290
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 54.5413%

JSON report: CypressIslandWA_FG112.json
HTML report: CypressIslandWA_FG112.html

fastp -i CypressIslandWA_FG112.F.fq.gz -o CypressIslandWA_FG112.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG112.json -h CypressIslandWA_FG112.html 
fastp v0.20.0, time used: 35 seconds