WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 3861275
total bases: 556023600
Q20 bases: 545358364(98.0819%)
Q30 bases: 528628444(95.073%)

Read1 after filtering:
total reads: 3857437
total bases: 555467996
Q20 bases: 544958758(98.108%)
Q30 bases: 528287601(95.1068%)

Filtering result:
reads passed filter: 3857437
reads failed due to low quality: 797
reads failed due to too many N: 3041
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 84.4722%

JSON report: CypressIslandWA_FG107.json
HTML report: CypressIslandWA_FG107.html

fastp -i CypressIslandWA_FG107.F.fq.gz -o CypressIslandWA_FG107.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG107.json -h CypressIslandWA_FG107.html 
fastp v0.20.0, time used: 41 seconds