WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 4081081
total bases: 587675664
Q20 bases: 576533839(98.1041%)
Q30 bases: 559071179(95.1326%)

Read1 after filtering:
total reads: 4076940
total bases: 587076592
Q20 bases: 576106617(98.1314%)
Q30 bases: 558710061(95.1682%)

Filtering result:
reads passed filter: 4076940
reads failed due to low quality: 886
reads failed due to too many N: 3255
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 83.4055%

JSON report: CypressIslandWA_FG106.json
HTML report: CypressIslandWA_FG106.html

fastp -i CypressIslandWA_FG106.F.fq.gz -o CypressIslandWA_FG106.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CypressIslandWA_FG106.json -h CypressIslandWA_FG106.html 
fastp v0.20.0, time used: 45 seconds