WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2055015 total bases: 295922160 Q20 bases: 287943698(97.3039%) Q30 bases: 272506093(92.0871%) Read1 after filtering: total reads: 2054297 total bases: 295503621 Q20 bases: 287812349(97.3972%) Q30 bases: 272446727(92.1974%) Filtering result: reads passed filter: 2054297 reads failed due to low quality: 288 reads failed due to too many N: 430 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 93.0875% JSON report: CatalinaCA_395.json HTML report: CatalinaCA_395.html fastp -i CatalinaCA_395.F.fq.gz -o CatalinaCA_395.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_395.json -h CatalinaCA_395.html fastp v0.20.0, time used: 27 seconds