WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2429710 total bases: 349878240 Q20 bases: 339894505(97.1465%) Q30 bases: 321390135(91.8577%) Read1 after filtering: total reads: 2428832 total bases: 349505362 Q20 bases: 339761541(97.2121%) Q30 bases: 321317900(91.935%) Filtering result: reads passed filter: 2428832 reads failed due to low quality: 368 reads failed due to too many N: 510 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 92.6405% JSON report: CatalinaCA_384.json HTML report: CatalinaCA_384.html fastp -i CatalinaCA_384.F.fq.gz -o CatalinaCA_384.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_384.json -h CatalinaCA_384.html fastp v0.20.0, time used: 30 seconds