WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 1988501 total bases: 286344144 Q20 bases: 278255678(97.1753%) Q30 bases: 263095118(91.8807%) Read1 after filtering: total reads: 1987841 total bases: 286053415 Q20 bases: 278153202(97.2382%) Q30 bases: 263039113(91.9545%) Filtering result: reads passed filter: 1987841 reads failed due to low quality: 253 reads failed due to too many N: 407 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 92.9635% JSON report: CatalinaCA_381.json HTML report: CatalinaCA_381.html fastp -i CatalinaCA_381.F.fq.gz -o CatalinaCA_381.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_381.json -h CatalinaCA_381.html fastp v0.20.0, time used: 26 seconds