WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 1572504 total bases: 226440576 Q20 bases: 220214798(97.2506%) Q30 bases: 208457536(92.0584%) Read1 after filtering: total reads: 1571944 total bases: 226045744 Q20 bases: 220099019(97.3692%) Q30 bases: 208410258(92.1983%) Filtering result: reads passed filter: 1571944 reads failed due to low quality: 225 reads failed due to too many N: 335 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 87.5803% JSON report: CatalinaCA_370.json HTML report: CatalinaCA_370.html fastp -i CatalinaCA_370.F.fq.gz -o CatalinaCA_370.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_370.json -h CatalinaCA_370.html fastp v0.20.0, time used: 24 seconds