WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2236455 total bases: 322049520 Q20 bases: 312831551(97.1377%) Q30 bases: 295785221(91.8446%) Read1 after filtering: total reads: 2235635 total bases: 321696255 Q20 bases: 312707024(97.2057%) Q30 bases: 295718836(91.9249%) Filtering result: reads passed filter: 2235635 reads failed due to low quality: 347 reads failed due to too many N: 473 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 83.6428% JSON report: CatalinaCA_367.json HTML report: CatalinaCA_367.html fastp -i CatalinaCA_367.F.fq.gz -o CatalinaCA_367.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j CatalinaCA_367.json -h CatalinaCA_367.html fastp v0.20.0, time used: 28 seconds