VCFtools - 0.1.16 (C) Adam Auton and Anthony Marcketta 2009 Parameters as interpreted: --vcf TotalRawSNPs.vcf --recode-INFO-all --mac 1 --max-non-ref-af 1 --minQ 30 --max-missing 0.9 --non-ref-af 0.001 --out Final --recode After filtering, kept 0 out of 0 Individuals Outputting VCF file... After filtering, kept 0 out of a possible 0 Sites File does not contain any sites Run Time = 0.00 seconds