WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 3305146 total bases: 475941024 Q20 bases: 460737357(96.8056%) Q30 bases: 432339108(90.8388%) Read1 after filtering: total reads: 3302927 total bases: 475438476 Q20 bases: 460506803(96.8594%) Q30 bases: 432194785(90.9045%) Filtering result: reads passed filter: 3302927 reads failed due to low quality: 1312 reads failed due to too many N: 907 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 39.8242% JSON report: SewardAK_308.json HTML report: SewardAK_308.html fastp -i SewardAK_308.F.fq.gz -o SewardAK_308.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j SewardAK_308.json -h SewardAK_308.html fastp v0.20.0, time used: 41 seconds