WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 1456933 total bases: 209798352 Q20 bases: 202884067(96.7043%) Q30 bases: 190096661(90.6092%) Read1 after filtering: total reads: 1455717 total bases: 209545303 Q20 bases: 202765990(96.7648%) Q30 bases: 190022777(90.6834%) Filtering result: reads passed filter: 1455717 reads failed due to low quality: 775 reads failed due to too many N: 441 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 47.1218% JSON report: SewardAK_301.json HTML report: SewardAK_301.html fastp -i SewardAK_301.F.fq.gz -o SewardAK_301.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j SewardAK_301.json -h SewardAK_301.html fastp v0.20.0, time used: 24 seconds