WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... GCCAGCAATAGCACCAAACATAAATCACCTCACTTAAGTGGCTGGAGACAAATAATCTCT Read1 before filtering: total reads: 2934473 total bases: 422564112 Q20 bases: 411002444(97.2639%) Q30 bases: 394653882(93.395%) Read1 after filtering: total reads: 2902139 total bases: 417565767 Q20 bases: 406473782(97.3437%) Q30 bases: 390419339(93.4989%) Filtering result: reads passed filter: 2902139 reads failed due to low quality: 4189 reads failed due to too many N: 1725 reads failed due to too short: 26420 reads with adapter trimmed: 54409 bases trimmed due to adapters: 4143933 Duplication rate (may be overestimated since this is SE data): 59.3705% JSON report: MontereyBayCA_Q418.json HTML report: MontereyBayCA_Q418.html fastp -i MontereyBayCA_Q418.F.fq.gz -o MontereyBayCA_Q418.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_Q418.json -h MontereyBayCA_Q418.html fastp v0.20.0, time used: 27 seconds