WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2385867 total bases: 343564848 Q20 bases: 330230950(96.119%) Q30 bases: 308898914(89.9099%) Read1 after filtering: total reads: 2384004 total bases: 343087724 Q20 bases: 330030194(96.1941%) Q30 bases: 308784288(90.0016%) Filtering result: reads passed filter: 2384004 reads failed due to low quality: 1152 reads failed due to too many N: 711 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 46.8923% JSON report: MontereyBayCA_441.json HTML report: MontereyBayCA_441.html fastp -i MontereyBayCA_441.F.fq.gz -o MontereyBayCA_441.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_441.json -h MontereyBayCA_441.html fastp v0.20.0, time used: 32 seconds