WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 1695032 total bases: 244084608 Q20 bases: 235215647(96.3664%) Q30 bases: 220065645(90.1596%) Read1 after filtering: total reads: 1691044 total bases: 243291919 Q20 bases: 234907139(96.5536%) Q30 bases: 219918461(90.3928%) Filtering result: reads passed filter: 1691044 reads failed due to low quality: 3479 reads failed due to too many N: 509 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 44.5681% JSON report: MontereyBayCA_440.json HTML report: MontereyBayCA_440.html fastp -i MontereyBayCA_440.F.fq.gz -o MontereyBayCA_440.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_440.json -h MontereyBayCA_440.html fastp v0.20.0, time used: 26 seconds