WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2992614
total bases: 430936416
Q20 bases: 415685915(96.4611%)
Q30 bases: 389852081(90.4663%)

Read1 after filtering:
total reads: 2990630
total bases: 430428262
Q20 bases: 415469360(96.5246%)
Q30 bases: 389724046(90.5433%)

Filtering result:
reads passed filter: 2990630
reads failed due to low quality: 1179
reads failed due to too many N: 805
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 47.3341%

JSON report: MontereyBayCA_438.json
HTML report: MontereyBayCA_438.html

fastp -i MontereyBayCA_438.F.fq.gz -o MontereyBayCA_438.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_438.json -h MontereyBayCA_438.html 
fastp v0.20.0, time used: 40 seconds