WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2628476 total bases: 378500544 Q20 bases: 366182839(96.7457%) Q30 bases: 343383702(90.7221%) Read1 after filtering: total reads: 2626575 total bases: 378019669 Q20 bases: 365976752(96.8142%) Q30 bases: 343261955(90.8053%) Filtering result: reads passed filter: 2626575 reads failed due to low quality: 1146 reads failed due to too many N: 755 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 44.3535% JSON report: MontereyBayCA_436.json HTML report: MontereyBayCA_436.html fastp -i MontereyBayCA_436.F.fq.gz -o MontereyBayCA_436.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_436.json -h MontereyBayCA_436.html fastp v0.20.0, time used: 35 seconds