WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 4231198 total bases: 609292512 Q20 bases: 589287004(96.7166%) Q30 bases: 552277594(90.6424%) Read1 after filtering: total reads: 4228224 total bases: 608517513 Q20 bases: 588960783(96.7862%) Q30 bases: 552087716(90.7267%) Filtering result: reads passed filter: 4228224 reads failed due to low quality: 1784 reads failed due to too many N: 1190 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 43.6143% JSON report: MontereyBayCA_432.json HTML report: MontereyBayCA_432.html fastp -i MontereyBayCA_432.F.fq.gz -o MontereyBayCA_432.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_432.json -h MontereyBayCA_432.html fastp v0.20.0, time used: 52 seconds