WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 3592784 total bases: 517360896 Q20 bases: 499662687(96.5791%) Q30 bases: 468266010(90.5105%) Read1 after filtering: total reads: 3588510 total bases: 516351952 Q20 bases: 499250559(96.688%) Q30 bases: 468047466(90.645%) Filtering result: reads passed filter: 3588510 reads failed due to low quality: 3237 reads failed due to too many N: 1037 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 46.4391% JSON report: MontereyBayCA_431.json HTML report: MontereyBayCA_431.html fastp -i MontereyBayCA_431.F.fq.gz -o MontereyBayCA_431.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_431.json -h MontereyBayCA_431.html fastp v0.20.0, time used: 44 seconds