WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 3938686 total bases: 567170784 Q20 bases: 549465206(96.8783%) Q30 bases: 517447876(91.2332%) Read1 after filtering: total reads: 3924446 total bases: 565072026 Q20 bases: 548248417(97.0227%) Q30 bases: 516577780(91.418%) Filtering result: reads passed filter: 3924446 reads failed due to low quality: 8561 reads failed due to too many N: 5679 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 62.8237% JSON report: MontereyBayCA_430.json HTML report: MontereyBayCA_430.html fastp -i MontereyBayCA_430.F.fq.gz -o MontereyBayCA_430.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_430.json -h MontereyBayCA_430.html fastp v0.20.0, time used: 45 seconds