WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2871272 total bases: 413463168 Q20 bases: 399242498(96.5606%) Q30 bases: 374441324(90.5622%) Read1 after filtering: total reads: 2869208 total bases: 412965622 Q20 bases: 399030483(96.6256%) Q30 bases: 374317537(90.6413%) Filtering result: reads passed filter: 2869208 reads failed due to low quality: 1346 reads failed due to too many N: 718 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 43.5674% JSON report: MontereyBayCA_416.json HTML report: MontereyBayCA_416.html fastp -i MontereyBayCA_416.F.fq.gz -o MontereyBayCA_416.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_416.json -h MontereyBayCA_416.html fastp v0.20.0, time used: 39 seconds