WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 1851132 total bases: 266563008 Q20 bases: 257860971(96.7355%) Q30 bases: 241870419(90.7367%) Read1 after filtering: total reads: 1849730 total bases: 266105545 Q20 bases: 257690338(96.8376%) Q30 bases: 241782346(90.8596%) Filtering result: reads passed filter: 1849730 reads failed due to low quality: 856 reads failed due to too many N: 546 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 45.5169% JSON report: MontereyBayCA_414.json HTML report: MontereyBayCA_414.html fastp -i MontereyBayCA_414.F.fq.gz -o MontereyBayCA_414.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_414.json -h MontereyBayCA_414.html fastp v0.20.0, time used: 28 seconds