WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 3973992
total bases: 572254848
Q20 bases: 552624172(96.5696%)
Q30 bases: 518397491(90.5886%)

Read1 after filtering:
total reads: 3971042
total bases: 571531886
Q20 bases: 552315867(96.6378%)
Q30 bases: 518211967(90.6707%)

Filtering result:
reads passed filter: 3971042
reads failed due to low quality: 1905
reads failed due to too many N: 1045
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 42.9016%

JSON report: MontereyBayCA_411.json
HTML report: MontereyBayCA_411.html

fastp -i MontereyBayCA_411.F.fq.gz -o MontereyBayCA_411.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_411.json -h MontereyBayCA_411.html 
fastp v0.20.0, time used: 48 seconds