WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2385956
total bases: 343577664
Q20 bases: 332214490(96.6927%)
Q30 bases: 311614327(90.6969%)

Read1 after filtering:
total reads: 2384236
total bases: 343020882
Q20 bases: 332005239(96.7886%)
Q30 bases: 311505972(90.8125%)

Filtering result:
reads passed filter: 2384236
reads failed due to low quality: 1049
reads failed due to too many N: 671
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 39.8076%

JSON report: MontereyBayCA_410.json
HTML report: MontereyBayCA_410.html

fastp -i MontereyBayCA_410.F.fq.gz -o MontereyBayCA_410.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_410.json -h MontereyBayCA_410.html 
fastp v0.20.0, time used: 33 seconds