WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 4729722 total bases: 681079968 Q20 bases: 658491032(96.6834%) Q30 bases: 618050457(90.7457%) Read1 after filtering: total reads: 4725930 total bases: 680050341 Q20 bases: 658072970(96.7683%) Q30 bases: 617819587(90.8491%) Filtering result: reads passed filter: 4725930 reads failed due to low quality: 2405 reads failed due to too many N: 1387 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 47.7269% JSON report: MontereyBayCA_403.json HTML report: MontereyBayCA_403.html fastp -i MontereyBayCA_403.F.fq.gz -o MontereyBayCA_403.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_403.json -h MontereyBayCA_403.html fastp v0.20.0, time used: 55 seconds