WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... GTTAACAGTCGGGAGAGGAGTGGCATTAACACCATCCTTCATGAACTTAATCCACTGTTC Read1 before filtering: total reads: 3481810 total bases: 501380640 Q20 bases: 488091786(97.3495%) Q30 bases: 469489252(93.6393%) Read1 after filtering: total reads: 3457509 total bases: 497812545 Q20 bases: 484984051(97.423%) Q30 bases: 466626533(93.7354%) Filtering result: reads passed filter: 3457509 reads failed due to low quality: 4518 reads failed due to too many N: 2031 reads failed due to too short: 17752 reads with adapter trimmed: 28982 bases trimmed due to adapters: 2622950 Duplication rate (may be overestimated since this is SE data): 76.0433% JSON report: DabobBayWA_Q245.json HTML report: DabobBayWA_Q245.html fastp -i DabobBayWA_Q245.F.fq.gz -o DabobBayWA_Q245.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_Q245.json -h DabobBayWA_Q245.html fastp v0.20.0, time used: 34 seconds