WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... ACCTCACTTAAGTGGCTGGAGACAAATAATCTCTTTAATAACCTGATTCAGCGAAACCAA Read1 before filtering: total reads: 3314210 total bases: 477246240 Q20 bases: 463905709(97.2047%) Q30 bases: 445483504(93.3446%) Read1 after filtering: total reads: 3292840 total bases: 474129735 Q20 bases: 461284218(97.2907%) Q30 bases: 443106287(93.4568%) Filtering result: reads passed filter: 3292840 reads failed due to low quality: 5020 reads failed due to too many N: 1921 reads failed due to too short: 14429 reads with adapter trimmed: 19457 bases trimmed due to adapters: 2115527 Duplication rate (may be overestimated since this is SE data): 70.123% JSON report: DabobBayWA_Q242.json HTML report: DabobBayWA_Q242.html fastp -i DabobBayWA_Q242.F.fq.gz -o DabobBayWA_Q242.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_Q242.json -h DabobBayWA_Q242.html fastp v0.20.0, time used: 34 seconds