WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
GATTGCCGAGATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTC

Read1 before filtering:
total reads: 3811134
total bases: 548803296
Q20 bases: 532800041(97.084%)
Q30 bases: 511839274(93.2646%)

Read1 after filtering:
total reads: 3775812
total bases: 543616766
Q20 bases: 528249114(97.1731%)
Q30 bases: 507625247(93.3792%)

Filtering result:
reads passed filter: 3775812
reads failed due to low quality: 6439
reads failed due to too many N: 2261
reads failed due to too short: 26622
reads with adapter trimmed: 40329
bases trimmed due to adapters: 2756057

Duplication rate (may be overestimated since this is SE data): 74.4377%

JSON report: DabobBayWA_Q239.json
HTML report: DabobBayWA_Q239.html

fastp -i DabobBayWA_Q239.F.fq.gz -o DabobBayWA_Q239.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_Q239.json -h DabobBayWA_Q239.html 
fastp v0.20.0, time used: 34 seconds