WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... CCAGCAATAGCACCAAACATAAATCACCTCACTTAAGTGGCTGGAGACAAATAATCTCTT Read1 before filtering: total reads: 3615860 total bases: 520683840 Q20 bases: 504989661(96.9859%) Q30 bases: 484007987(92.9562%) Read1 after filtering: total reads: 3593637 total bases: 517450141 Q20 bases: 502298444(97.0719%) Q30 bases: 481575698(93.0671%) Filtering result: reads passed filter: 3593637 reads failed due to low quality: 5641 reads failed due to too many N: 2106 reads failed due to too short: 14476 reads with adapter trimmed: 18519 bases trimmed due to adapters: 2115984 Duplication rate (may be overestimated since this is SE data): 72.8405% JSON report: DabobBayWA_Q235.json HTML report: DabobBayWA_Q235.html fastp -i DabobBayWA_Q235.F.fq.gz -o DabobBayWA_Q235.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_Q235.json -h DabobBayWA_Q235.html fastp v0.20.0, time used: 35 seconds