WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
GTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTA

Read1 before filtering:
total reads: 3104709
total bases: 447078096
Q20 bases: 433968955(97.0678%)
Q30 bases: 416118836(93.0752%)

Read1 after filtering:
total reads: 3083269
total bases: 441395306
Q20 bases: 428843642(97.1564%)
Q30 bases: 411348150(93.1927%)

Filtering result:
reads passed filter: 3083269
reads failed due to low quality: 5010
reads failed due to too many N: 1756
reads failed due to too short: 14674
reads with adapter trimmed: 47415
bases trimmed due to adapters: 4706306

Duplication rate (may be overestimated since this is SE data): 68.4868%

JSON report: DabobBayWA_FG230.json
HTML report: DabobBayWA_FG230.html

fastp -i DabobBayWA_FG230.F.fq.gz -o DabobBayWA_FG230.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_FG230.json -h DabobBayWA_FG230.html 
fastp v0.20.0, time used: 28 seconds