WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 3581261 total bases: 515701584 Q20 bases: 499115933(96.7839%) Q30 bases: 469707605(91.0813%) Read1 after filtering: total reads: 3568418 total bases: 513801395 Q20 bases: 498035974(96.9316%) Q30 bases: 468948704(91.2704%) Filtering result: reads passed filter: 3568418 reads failed due to low quality: 8156 reads failed due to too many N: 4687 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 66.0843% JSON report: DabobBayWA_FG221.json HTML report: DabobBayWA_FG221.html fastp -i DabobBayWA_FG221.F.fq.gz -o DabobBayWA_FG221.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_FG221.json -h DabobBayWA_FG221.html fastp v0.20.0, time used: 43 seconds