WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 4351224 total bases: 626576256 Q20 bases: 607381183(96.9365%) Q30 bases: 571697592(91.2415%) Read1 after filtering: total reads: 4334991 total bases: 624204524 Q20 bases: 606009573(97.0851%) Q30 bases: 570719420(91.4315%) Filtering result: reads passed filter: 4334991 reads failed due to low quality: 9951 reads failed due to too many N: 6282 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 69.8085% JSON report: DabobBayWA_FG220.json HTML report: DabobBayWA_FG220.html fastp -i DabobBayWA_FG220.F.fq.gz -o DabobBayWA_FG220.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_FG220.json -h DabobBayWA_FG220.html fastp v0.20.0, time used: 49 seconds