WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2699480 total bases: 388725120 Q20 bases: 373681046(96.1299%) Q30 bases: 348943071(89.766%) Read1 after filtering: total reads: 2693297 total bases: 387720835 Q20 bases: 373219002(96.2597%) Q30 bases: 348680682(89.9309%) Filtering result: reads passed filter: 2693297 reads failed due to low quality: 5400 reads failed due to too many N: 783 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 35.7214% JSON report: DabobBayWA_FG216.json HTML report: DabobBayWA_FG216.html fastp -i DabobBayWA_FG216.F.fq.gz -o DabobBayWA_FG216.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_FG216.json -h DabobBayWA_FG216.html fastp v0.20.0, time used: 38 seconds