WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
CGTTCTTGCAAATCACCAGAAGGCGGTTCCTGAATGAATGGGAAGCCTTCAAGAAGGTGA

Read1 before filtering:
total reads: 4186341
total bases: 602833104
Q20 bases: 585881134(97.1879%)
Q30 bases: 562718199(93.3456%)

Read1 after filtering:
total reads: 4157898
total bases: 598713819
Q20 bases: 582948943(97.3669%)
Q30 bases: 560116367(93.5533%)

Filtering result:
reads passed filter: 4157898
reads failed due to low quality: 10578
reads failed due to too many N: 5657
reads failed due to too short: 12208
reads with adapter trimmed: 14785
bases trimmed due to adapters: 1777161

Duplication rate (may be overestimated since this is SE data): 66.0002%

JSON report: DabobBayWA_FG202.json
HTML report: DabobBayWA_FG202.html

fastp -i DabobBayWA_FG202.F.fq.gz -o DabobBayWA_FG202.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_FG202.json -h DabobBayWA_FG202.html 
fastp v0.20.0, time used: 40 seconds