WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 3628430 total bases: 522493920 Q20 bases: 506367232(96.9135%) Q30 bases: 476538086(91.2045%) Read1 after filtering: total reads: 3616391 total bases: 520704372 Q20 bases: 505306918(97.043%) Q30 bases: 475766603(91.3698%) Filtering result: reads passed filter: 3616391 reads failed due to low quality: 6797 reads failed due to too many N: 5242 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 58.4806% JSON report: DabobBayWA_247.json HTML report: DabobBayWA_247.html fastp -i DabobBayWA_247.F.fq.gz -o DabobBayWA_247.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_247.json -h DabobBayWA_247.html fastp v0.20.0, time used: 43 seconds